Some 1,600 Palestinians held in Israeli prisons have been participating in the strike, with prisoners reporting severe health deterioration - including several hunger strikers coughing up blood - and continued repressive measures imposed on the prisoners by IPS.
Palestinian prisoners in Israeli jails have been on a hunger strike for almost a month - only surviving on salt water.
The ministry says the protesters sustained light leg injuries from low caliber bullets at Thursday's rally, during which some Palestinians threw rocks at Israeli soldiers.
However, a committee formed to support the Palestinian hunger strikers quickly denounced the footage, calling the video's release part of an Israeli "war of lies" to discredit the prisoner movement.
But for Israel, Barghouti is a terrorist.
Those on strike are requesting more family visits, better healthcare and more dignified conditions in prison.
He said he is increasingly concerned about Barghouti, who has been held in isolation since the start of the hunger strike on April 17.
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In 2002 he was found guilty by an Israeli court of orchestrating two shootings and a bombing that killed five people.
The Palestinian militant group Hamas, which controls the Gaza Strip, remains deeply split from its more moderate political rival, Fatah, and its leader Abbas, who heads the Palestinian Authority.
She said it's also problematic to "make an allegation against somebody who is in your custody and then hold him incommunicado so he can not respond to that allegation".
"Instead of helping us turn to the young generation of Arab society and call on them to join the police and save lives, Ayman Odeh once again proves that what is really important to him is not really the good of Israeli Arabs, but to support enemies of the country", Erdan added.
But the longer the hunger strike goes on the greater the potential it has to fuel unrest in the Palestinian territories.
Israel says its prisons meet global standards.
Al Jazeera compiled a timeline of notable mass hunger strikes in Palestinian history and looked at what has been achieved. Over the past 50 years, more than 800,000 Palestinians have been imprisoned or detained by Israel (about 40% of all Palestinian men living under occupation have at some point been detained by Israel). "Holding them in the West Bank alone, without Gaza, will cement division", said Hamas spokesman Fawzi Barhoum.